Jan Eglinger

I took the liberty (and responsibility) and merged it now. Thanks @carandraug for providing the mirrors!

> "The guide is being modernized [link] meanwhile the old version is here [link to PDF]" The html version of the original user guide is available as well for linking....

`DefaultTableIOPlugin` was removed from this component with https://github.com/imagej/imagej-server/commit/789f923641b80a50a44e1e69436f45053517ca7f, in favor of `scijava-table`. I guess the version on the update site is outdated (at least there hasn't been a release since...

May I ask why this synchronization has to happen in `pyimagej` instead of `imagej-legacy`? Aren't we facing similar situations when converting/synchronizing between `ImagePlus` and `Dataset` even in a standalone Fiji,...

For some reason, SCIFIO's `FileToDatasetConverter` tries to convert the string to a `Dataset` by loading from a file path defined by the string. I wonder why it tries to convert...

> `https://downloads.imagej.net/fiji/archive/20201104-1356/fiji-linux64.zip` It seems you're running an outdated Fiji installation which I believe ships an old version of SCIFIO that doesn't include the fix for `StringToDatasetConverter` and `FileToDatasetConverter` (although I...

@oeway you are right, this seems to be the latest packaged version. The ImageJ core update sites have a newer state however, and only running the updater will get you...

The output of the Ops commands is a _virtual_ stack, isn't it? Maybe that's a notable difference. Did you try if a `run("Duplicate...", "")` or `imp.duplicate()` or similar helps when...

This sounds like an issue in the SCIFIO writer that is incompatible with the ImageJ1 `TiffDecoder`. https://github.com/scifio/scifio/issues/322 might be related.

@ctrueden @bnorthan are there any plans to merge this one soon? Or is it on hold until `scijava-ops` are out? I'm asking because I'd like to use some of this...