ilia-kats
ilia-kats
This closes #174. I'm not sure if this is the best approach, but as far as I understand, ggplot always removes NA values, the only difference is whether there is...
Currently, folders specified in the Network->TFTP/SAMBA tab simply get appended as extra qemu arguments, overriding any settings specified in Network->Network->smb or tftp. If I understand the purpose of the TFTP/SAMBA...
Apparently, vectorizing a boolean operation returns a BitArray{1}. This cannot be written to a file: ``` file = h5open("test.h5", "r+") file["test"] = 1:10 .< 5 ``` results in ``` ERROR:...
HDF5.jl reads boolean arrays written by h5py as Int8 arrays. Apparently, h5py stores boolean arrays as HDF5 enums with names `TRUE` and `FALSE` by default. h5py's names [can](url) be changed...
Following the documentation and tutorials, code like ``` image = sq.im.ImageContainer(adata.uns["spatial"]["spaceranger100_count_30458_ST8059048_mm10-3_0_0_premrna"]["images"]["hires"], scale=adata.uns["spatial"]["spaceranger100_count_30458_ST8059048_mm10-3_0_0_premrna"]["scalefactors"]["tissue_hires_scalef"]) viewer = image.interactive(adata) ``` should work and has worked in the past. However, with Squidpy 1.2.0, it aborts...
We didn't establish a clear policy around logging early on, so now some parts of muon use Scanpy's logger, while others issue plain warnings using the `warnings` module. Ideally, this...
When trying to calculate a confidence interval for FisherExactTest with large numbers, e.g. ```confint(FisherExactTest(2216,9338, 3172,1335))```, Julia gets stuck at 100% CPU for 10-15 minutes. As a comparison, in R ```fisher.test(matrix(c(2216,...
Currently, when plotting a pairs plot of factors, which happens automatically when `plot_factors` receives more than 2 factors, a red-blue color scale is applied to the legend, but not to...
The newenviron package itself pulls in catoptions, which prevents biblatex from parsing package options. AFAICT the newenviron package is not needed, in fact, commenting it out does not seem to...