Indrajit Kumar
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4
issues of
Indrajit Kumar
What are TFBS_score based on? Does the tool use TOMTOM or something similar? Is there any guideline for considering a good TFBS score to select only high confidence motif match?
question
Is it possible to run a genotype-treatment interaction type analysis for differential binding? Or, any intermediate data from Tobias pipeline that could be used for such analysis?
Hi there, Thank you for developing and maintaining this tool. I was wondering if using only Nfr fragments would improve the performance. Also, is there any minimum read # /...
question
There seems to be a bug while using annotatePeak with ingoreUpstream=TRUE. Many peaks show up annotated as "Downstream (