Isaac Hodes
Isaac Hodes
Related to web view https://github.com/hammerlab/ketrew/issues/207 and textual tree-view https://github.com/hammerlab/ketrew/issues/52
Right now, an enum passed to a tuple term would be applied to all the tuples, so they must be all the same type and take the same values if...
Unfortunately this doesn't seem to help (at least, noticeably); I still have to wait a beat between `a` and e.g. `e` for emacs, otherwise I have to hit `e` twice....
``` sql with stats as ( select min("sample:DP"::INTEGER) as min, max("sample:DP"::INTEGER) as max from genotypes where vcf_id = 222 and sample_name = 'TUMOR' ), histogram as ( select width_bucket("sample:DP"::INTEGER, min,...
Should support ReassignOneMappingQuality as a first-class option. It does the following: > reassign all good alignments to the default value of 60 Why, you ask? > This is not ideal,...
This can be scatter-gathered according to the above links. Will be a huge win for us.
@smondet Assigning you as you mentioned being mostly there on this at some pt. Unassign if you can't get to this, no worries.
Nice catch; seems pretty important. @smondet is that something we could support in #286?
The GATK indel realigner errors on reads with N in the CIGAR string, or will drop them with a CLI option. At the very least, we should be able to...
Definitely! It's not a blocker for PGV001, but would be awesome to have nonetheless.