Isaac Hodes
Isaac Hodes
docs http://www.ccb.jhu.edu/software/hisat/manual.shtml#the-hisat-build-indexer
Can't the Pipeline compiler use the meta playground? Why does it need its own directory? On Wed, Mar 16, 2016 at 6:14 PM Sebastien Mondet [email protected] wrote: > The "work"...
`--rg '@RG\\tID:%s'` should work, but doesn't appear to.
I agree. @iskander came over and we all chatted; each directory is a work_dir in their specific contexts; so they can all be called work_dir, and disambiguated when necessary with...
I dropped the non-ID field, but the @RG header doesn't show up in the output of HISAT at all (unless sam-to-bam is discarding it, but that seems unlikely).
Good question. I haven't used HISAT in ages since it kept crashing/hanging. On Thu, Oct 20, 2016 at 10:54 AM, Sebastien Mondet wrote: > > @ihodes https://github.com/ihodes has this been...
https://console.cloud.google.com/storage/browser/hammerlab-biokepi-data/raw_data/broad-bundle/?project=pici-1286&authuser=0
From @iskandr > Just a small note: an Ensembl release doesn't necessarily correspond to a > different minor patch of a genome. They release on a regular schedule and >...
Hah I'd pass on this for now; we don't need it for anything yet.
Yeah, absolutely something I want to do. The main difficulty, FTR, is our custom "Demeter" module which primarily defines a Machine.t and is particular to our environments. A tutorial would...