Ian Holmes

Documentation of GBrowse to JBrowse migration

1

We need a tutorial/HOWTO showing how to migrate an existing GBrowse installation to JBrowse, including discussions of the pitfalls and caveats (e.g. Perl callbacks). At first, this guide should describe...

Highlight context menu

5

Highlight seems to be broken, or is working inconsistently. I can reproduce this problem on the jbrowse.org demo using Chrome 65.0.3325.181, macOS Sierra 10.12.6. Just click on the highlight button...

The current behavior (which leaves target files in place even if the build fails while trying to run the recipe for that target) was originally by design, but it is...

The ability to add Prolog clauses to rules is the unsung feature of biomake: potentially quite powerful, but lacking clear use cases & recipes. How about a few examples in...

Can leverage MD5 hash management code invoked by `--md5-hash`

see here: https://www.gnu.org/software/make/manual/html_node/Prerequisite-Types.html

Typing `biomake xyz` with the following Makefile causes biomake to bail out with the error "Exceeds maximum length of dependency chain". GNU Make does not exhibit this behavior. ~~~~ %:...

- [ ] Set up browserify/grunt - [ ] Move `colors` dependency to `bin/transform.js` - [ ] Trim other dependencies

Noted by @cmungall

e.g. the attached file hangs indefinitely [bouncer.txt](https://github.com/ihh/bracery/files/4430672/bouncer.txt)