igrabski

Hi, can you show the outputs if you just run `day14og` and `day14controlspatial`? The error message shows that you have 12 features in your reference, which seems odd.

Hi Kyle, can you show the steps in creating and processing your object `obj` up the point where you are running `FindMarkers`, and what the output is when you print...

Hi, can you double-check if `colnames(seu_obj.integrated)` has any duplicates, as well as whether there are duplicates in `df$ensembl_gene_id`?

Hi Vivek, can you show the details leading to the creation of your objects `seurat.reference` and `seurat.query`?

Hi, can you show what the output of your object `wt` looks like, and what your input counts `rna_counts` looks like?

Thanks! And sorry, by `rna_counts`, I am referring to your object called `rna_counts` (from this line of code, `rna_counts

Hi, this error occurs if every single feature contains at least one zero, so it does indicate sparsity. Can you describe more about your data here? How did you pseudobulk...

Thank you for this bug report! We have investigated and agree this is an issue; we will address it in a future update.

Thanks for providing all this detail -- we are currently investigating this problem and hope to have a solution soon.

Hi, we have been unable to reproduce these issues on our end. I am closing this issue for now, but if problems persist even with updated versions of `Seurat`, `SeuratObject`,...