igor
igor
I tried converting a recording to a GIF. ``` docker run --rm -v $PWD:/data asciinema/asciicast2gif https://asciinema.org/a/193932.json 193932.gif ``` The original on the website looks fine: [](https://asciinema.org/a/193932) But as you can...
I am trying to call peaks in ATAC-seq data. According to the documentation: > To find enriched cutting sites such as some DNAse-Seq datasets. In this case, all 5' ends...
From Salmon 0.13.1 release notes: > This version adds the `--allowDovetail` flag which overrides the newly-default behavior of discarding dovetail mappings of paired-end reads. If passed this flag, salmon will...
This is probably more of a question for other users rather than the developers. There are known polymorphic sites provided for human hg19/hg38 genome. Is there a version available for...
Do you have any recommendations on dealing with a low number of sites (n)? When it's 0, the relatedness is NaN. When it's a very low number (less than 20),...
It might be worthwhile to add samtools to the installation requirements list. I used the suggested command: ``` conda install numpy scipy cython numba matplotlib scikit-learn h5py click ``` Then...
I have a long message docstring. If I use the `-h` parameter, the full message is shown. However, for any errors, it gets cut off. This did not happen with...
I am trying to understand the `_pkgdown.yml` `template` field. Specifically, when is it necessary to use `params`? In the [docs](https://pkgdown.r-lib.org/reference/build_site.html?q=params#template), there are a few examples, such as: ``` template: params:...
I originally posted a comment on a previous issue: https://github.com/GreenleafLab/NucleoATAC/issues/38 , but the original issue is closed, so maybe it wasn't seen. Thus, I am reposting as a new issue...
I am trying to convert from AnnData to Seurat via h5Seurat. The process started, but then I got an error and an incomplete `h5seurat` was generated. ``` > Convert("file.h5ad", dest...