Ignacio Eguinoa

Hi! We have been discussing some things related with refgenie usage by the Galaxy community last days and a few things related with this thread popped up. First of all,...

Indeed, I see now that the container can be set in the recipe new recipes. It's defined as CONT: "databio/refgenie" for most of them, and from the documentation I understood...

I agree with the use of tags and I think the default_tag field is perfect. But this would require the existence of a parameter to indicate which container to use,...

Hi, thanks a lot for the detailed reply, it answers all I needed. > For adding resources, it depends on if it's a genome or an asset type. You're asking...

> Thanks for the interest! > > > For this, currently the only option is that the newly deployed refgenie adds our public refgenie server as genome server and then...

> > I'm getting an error when using asset-registry-paths containing a dot (.) in the name > > dots are used to specify seek keys, see: http://refgenie.databio.org/en/latest/asset_registry_paths/ > oh ok...

perfect. sorry I misunderstood the documentation then. thanks a lot for the quick help.

Hi @jmchilton , thanks for the response. I agree in everything, and that was my realization shorty after creating this so we created a separate command-line utility that takes the...

no problem, I actually forgot to post a link to that galaxy2cwl repo here. No need to convince me to hack on the gxformat2 ;) the galaxy2cwl was a bit...

Awesome @nsoranzo, thanks a lot. This was also discussed in the [IWC plans](https://github.com/galaxyproject/iwc/issues/29) where the plan is maybe to merge it into planemo, as its a more stable and known...