Ian Dryg

icon indicating a website link https://www.linkedin.com/in/idryg/ icon indicating an email [email protected]

icon company Dana-Farber Cancer Institute icon location Seattle, WA icon location Computational Scientist studying spatial biology in immuno oncology.

Results 7 comments of Ian Dryg

use metadata (or active ident) in plot_stat

Agreed, I came here to mention this. I'd previously labeled my clusters with the RenameIdents() function in Seurat, and using Scillus am unable to get it to plot with those...

Compatibility with Raspberry Pi 5?

Hi Joseph, Sincere apologies, didn't mean to come across short. Admittedly I have been bombarding chatgpt with questions daily. I very much appreciate your years of support on this project...

`options(c("repr.plot.width", "repr.plot.height"))` not handled as expected.

I am encountering the same issue. When I use options as you have, some options are applied to plots made prior to the options call... Did you find any solution?

JoinLayers(): no applicable method for 'JoinLayers' applied to an object of class "c('SCTAssay', 'Assay', 'KeyMixin')" when use SCTintegration object

I'm experiencing the same issue.

how to change the size of the circles in the legend of SpatialDimPlot?

I have a spatial seurat object with multiple tissue slices, and this only increases the size of the legend circles in the last tissue slice. Any way to change for...

how to change the size of the circles in the legend of SpatialDimPlot?

Figured it out. Use & instead of + and it applies to all legends.

BUG: `VariableFeaturePlot()` fails when performed on different assays

I experienced the same issue.