Iain Carmichael
Iain Carmichael
#### Describe the bug The estimator_ object fit by `CondensedNearestNeighbour()` (and probably other sampling strategies) is incorrect when y has multiple classes (and possibly also for binary classes). In particular,...
# The problem There is a subtle edge case with with [compute_nuclei_features](https://github.com/DigitalSlideArchive/HistomicsTK/blob/1200e540c0184a2fde3a2e7e85644ce93f1e1a11/histomicstk/features/compute_nuclei_features.py#L10) for the cytoplasm features. In particular, [dilate_xor](https://github.com/DigitalSlideArchive/HistomicsTK/blob/1200e540c0184a2fde3a2e7e85644ce93f1e1a11/histomicstk/features/compute_nuclei_features.py#L184) is not guaranteed to for cytoplasm for every single nuclei i.e....
My understanding of [compute_haralick_features](https://github.com/DigitalSlideArchive/HistomicsTK/blob/f737e1dd0010ade64069140c42c8c572a65a31a6/histomicstk/features/compute_haralick_features.py#L9) is that you can provide im_intensity as a 2d array of float intensity values between 0 and 1. However, as written, the function will **always** cast...
I installed histomicstk using `pip install histomicstk` then get the following error message when I try to import the package ```python from histomicstk.features import compute_morphometry_features ~/anaconda3/envs/comp_onc/lib/python3.8/site-packages/histomicstk/__init__.py in 1 # import...
Add the new version of AJIVE from https://github.com/idc9/mvdr/tree/main/mvdr/ajive. The backed of this new version is much cleaner compared to the old version. The API is also enhanced.
I am very happy to that see someone implementing adaptive Lasso in Python (#169)! It would be great if celer also implemented the more general LLA algorithm for any folded...
Reading in an image from a qptiff file breaks when I run the same code twice. If I run the below once it works. If I run it again (I'm...
Reading in an image from a .svs file via pyvips fetch returns a completeley messed up image. Reading in with the crop method does return the correct image. See example...
## 🐛 Bug `torchmetrics.classification.BinaryAccuracy` will apply a sigmoid to some inputs but not others leading to incorrect behavior. ## Details The current behavior of BinaryAccuracy() is to apply a sigmoid...
I'm having trouble pip installing this package. I'm using Python 3.7.1 and macOS High Sierra. ``` pip install madoka ``` Results in the following error ``` Collecting madoka Using cached...