Ilan E Chemmama

SampledDensityMap - Which constructor is chosen affects results.

3

SampledDensityMap has 3 constructors for its class. ``` (i) SampledDensityMap(KernelType kt = GAUSSIAN); (ii) SampledDensityMap(const DensityHeader &header, KernelType kt = GAUSSIAN); (iii) SampledDensityMap(const ParticlesTemp &ps, emreal resolution, emreal voxel_size, IMP::FloatKey...

There is an unexpected behavior in EM2D right now when fitting a model to an image. The error shows up when the pixel size is fairly high (~2Å/pix). The error...

SampledDensityMap - Model and map generated from model do not align.

1

I think this has been reported before but when generating a map from a model using IMP::em::SampledDensityMap, the model and the map are not align. I attached a code snippet...

When creating high-resolution EM map with SampledDensityMaps, some of the density planes are empty (missing?), creating a stratified effect not present when comparing to maps created with other softwares. I...

Density sampling and EM projections not working as expected

3

The current version of the EM and EM2D modules uses the KernelParameters.h file to sample the density at a given resolution and angstrom per pixel (apix). However both uses the...