Hamdiye Uzuner

icon company University of Duisburg-Essen icon location Germany icon location PhD student in the Bioinformatics and Computational Oncology lab @koesterlab

Results 3 comments of Hamdiye Uzuner

feat: add option to allow mapping to pangenome

Bug with vg: alignments with deletions on ends: https://github.com/vgteam/vg/issues/4204. They fixed the issue and the new release is coming on Feb. 26.

representation of a nuc conversion do not point a conversion on the genome

Thanks for your answer! What is the difference between augur clades and nextstrain clades? Are they not same or similar? In my case, I need either full fasta sequences or...

representation of a nuc conversion do not point a conversion on the genome

> cc @corneliusroemer - I think you have a fasta of representative sequences for each lineage? Would be great to hear if this exists.