Muad Abd El Hay
Muad Abd El Hay
Thank your for the quick reply. Do I understand it correctly that the package needs the outputs of RNA velocity for the analysis?
Having the same issue.
Probably need to do some benchmarking to find out which parts of the code would benefit the most from a performance boost. As for the dplyr pipes, using dtplyr which...
Since IKAP uses some functions from Seurat, I guess parallelization can be done using the [Seurat method](https://satijalab.org/seurat/v3.0/future_vignette.html). According to Seurat, the following functions can use parallelization: NormalizeData ScaleData JackStraw FindMarkers...
Another option would be to use snakemake to run the workflow
I needed to do egocentric alignment for my data and tried to do this with cart2pol/pol2cart. I am still not sure if this is the correct approach (find out the...
Yeah, I went ahead and only ran longer videos. I was wondering how much input is needed to get good models. I am currently going with DeepEthogram but hope to...
I just checked the AnimalZoo preprint and the mentioned references. It doesn't seem that any of the actual labeled datasets are available, but in some cases, the videos are (see...
So, I started to implement this for some of my own videos and currently refining the predictions on 300 images to test if it improves things. Meanwhile, it seems like...
The results are a bit better when one uses spatio-temporal adaptation. But not as I would expect. Yes, the positions are the same. Then I will go ahead and try...