Yaniv Kusuma

cuteSV nanopore parameters.

1

Any reason why cuteSV report parameters for SV calling are not used? cuteSV recommends following parameters according to their gitub page. > For ONT data: --max_cluster_bias_INS 100 --diff_ratio_merging_INS 0.3 --max_cluster_bias_DEL...

Questions regarding deciding kmer size and minimizer size in Kraken2

2

Hello, I am planning to dig deep in my nanopore shotgun data and figure out how i can make better analysis. Currently, with default parameters the results are not bad...

I see that not all species in kraken2 report are being added into pavian html. Can you tell me what is the criteria of selection in pavian? and any way...

Creating a large custom database from NCBI refseq

7

Hello, I am trying to build a database for taxor using ncbi refseq sequences from Prokaryotes, Archaea, Bacteria, Virus and Fungii (almost 50k orgamisms in total). ` taxor build --input-file...