huawen-poppy

error in datapre step

7

Hello, thanks for your great tool! Recently I am trying to run xpore on my data, however, there is an error stating that: ` File "pandas/_libs/lib.pyx", line 2411, in pandas._libs.lib.maybe_convert_numeric...

Hello! Thanks for your nice tool! Could you please tell me the difference between scgen.SCGEN and scgen.SCGENVAE? I am now following the tutorial to train a model for perturbation prediction...

question about input matirx size

2

Hello, thanks for your useful tool! Recently I was trying to run the kBet on a matrix with size 4280*30. But it turns out an error stating that:  I...

question about transcriptome/genome

2

Hi. Thank you for your nice tool! I have a poorly annotated transcriptome file in my species Aiptasia. This file lacks isoform level annotation and all the isoforms are removed....

Question about assemble long-read sequencing data with short-read polishing

3

Hello! Thanks for your helpful tool! I am trying to assemble long-read sequencing data with short-read polishing. My long read data (nanopore direct RNA sequencing) are from the animals under...

question about input data in BayesPrim

1

Hello. Thank you for the amazing tool BayesPrim. I am wondering if I have bulk RNA seq data under A, B, C, and D conditions. But I only have the...

Thank you for this nice tool. I am wondering can cytotalk be used for any other species other than human?

Hi, in your paper you mentioned that: 'We then performed a principal component analysis (PCA) on the high-dimensional read-level features to map reads into a two-dimensional space'. could you please...

question about species

1

Hello! Thanks for your nice tool! I am wondering could m6anet used for other species' (non human or arabidopsis) m6a modified site prediction?

Hi! I was running the onlyAnn mode through the singularity. However, there is an error saying that: ``` Command error: cp: can't stat '/gene_annotation/TransPi/DBs/sqlite_db/*.sqlite': No such file or directory ```...