Neng Huang

will "random.randint(self.corpus_lines if self.corpus_lines < 1000 else 1000)" report error?

1

in the dataset.py line 31, it seem to report error random.randint() needs two positional argument.

Hi, I use kalign to perform MSA for DNA sequence. I used the parameter `kalign -i reads.fa -f clu --tgpe 0.01 --gpo 0.2 --gpe 0.4`. The input fasta file is...

Hi: 1. As the paper metioned, the objective function of the model is to make the transformed input data samples to be maximally correlated under the canonical correlation analysis (CCA)...

Require an documentation

2

To developer: Thanks a lot for developing such a nice project. There are many parameters to be set in Ranger21, but I don't know what these parameters do. If possible,...

To developer: Thank you for developing such a grateful optimizer. I have used it with pytorch_1.8 and pytorch_1.9 successfully. When I use the pytorch_1.3.1, ranger21 reports some errors. I think...

compile error

3

Hi, when I compile the code, it shows the error as follows： ``` huangneng@bio2:~/tools/CoLoRd-master$ make g++ -Wall -O3 -std=c++17 -static -Wl,--whole-archive -lstdc++fs -lpthread -Wl,--no-whole-archive -I src/colord/../common/libs/zlib -I src/colord/libs/kmc_api -I src/colord/libs/edlib...

When aligning proteins to a chromosome with large size (maybe greater than 2Gb), the output gff file is almost empty. 

network structure

3

the structure seems to be different from the ResNeXt block in the paper "Aggregated Residual Transformations for Deep Neural Networks".