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                                            huangk3

'Index out of range' does not point to exact annotation

Hi Brent, I got this same issue and came across this thread. The same command runs well against the original GRCh37 version of the annotation bed file. Then I used...

'Index out of range' does not point to exact annotation

The bed file actually has some malformatted lines with fewer columns than expected. The error is fixed after I regenerated the bed file. Sorry about the mistake and thanks!