CytoCommunity
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huBioinfo
A spatial omics data analysis tool that enables both unsupervised and supervised discovery of complex tissue cellular neighborhoods from cell phenotypes.
Hello Authors, Thanks for creating this tool. I'm having trouble installing the Python environment from requirements.txt using Conda. It can't find some packages: ``` Collecting package metadata (current_repodata.json): done Solving...
Hello, Yuxuan Thank you for developing the tool! I can run Cytocommunity very smoothly on Linux but have a hard time running it on my Mac. I wonder if you...
Dear authors, Hi, all! Thank you so much sharing great tool to community. I happen to come across you used DLPFC 10x visium data on CytoCommunity as well but can't...
Hello, Now that I have the input in the right place, I manage to run Step 0 and 1 successfully. Now, in the Step 2 - SoftTCNLearning_Supervised.py when running this...
Hello, Thank you for providing this interesting tool, I surely missed something, but I did not understand from the tutorial how I can create the Node Attribute.txt and Graph Index.txt...
I got the following error: `the array at index 0 has size 4 and the array at index 1 has size 5` when running the Step2 script in the supervised...
