Hannah A Pliner
Hannah A Pliner
Hi, Sounds like something has gone wrong here, going from the message you quoted to the list of example cells found should be quite quick (a few minutes max). Can...
Hello, the 'All checks have failed' code has to do with out continuous integration system and should not cause an issue with your install. I can't see the image you've...
Hello, Sorry, missed this issue. Have you tried installing via the above when original monocle is not attached (i.e. in a new session)? I'm wondering if this is from some...
Closing, reopen if this remains an issue
Hello, thanks for the post. To submit the classifier, can you attach the classifier RDS file and the marker file that you used to train it?
Hi Hugo, thanks for sending. I got the marker file, but looks like the classifier didn't save correctly - can you please save it using the saveRDS function? Thanks
Closing from lack of activity - reopen if still an issue
Apologies for the long delay. Are your accessible sites in the format 'chr_bp1_bp2'? Please provide the head of your input matrix if this is still a function - the output...
Hmm, this is a case that would require some modifications to fix. However I will say that the gene activity score values for two genes with the same promoter peak...
Hello, I'm going to need more info to look into this. Are any of your input peaks NA? Do they all follow the same chr-bp1-bp2 pattern?