error with run_cicero function

[lucyu2668]

when I run the function: conns<-run_cicero(cicero_cds,chromosome_length) R returen as: [1] "Starting Cicero" [1] "Calculating distance_parameter value" Error: logical subscript contains NAs In addition: Warning messages: 1: In estimate_distance_parameter(cds, window = window, maxit = 100, : NAs introduced by coercion 2: In estimate_distance_parameter(cds, window = window, maxit = 100, : NAs introduced by coercion

What does this mean? How can I fix the problem?

[hpliner]

Apologies for the long delay. Are your accessible sites in the format 'chr_bp1_bp2'? Please provide the head of your input matrix if this is still a function - the output to head(fData(cicero_cds))