David Hollenstein

Hi, Thanks for the update. I can run my samples with the latest release and let you know in the next days if the issue is gone. Best, David

Hi, I ran the same dataset with the newest version of FragPipe and used the standard LFQ-MBR workflow. ``` Version info: FragPipe version 19.0 MSFragger version 3.6 IonQuant version 1.8.9...

Yes, the issue is already present in the PSM table.

Sure, I will send you a link

Hi, thanks for information. In the MS facility we use our own contaminants file, so I was expecting that some entries might become duplicated in combination with certain organisms. Otherwise...

Hi, sorry for the delay. I've re-run FragPipe with the following versions: FragPipe version 19.0 MSFragger version 3.6 IonQuant version 1.8.9 Philosopher version 4.7.0 Unfortunately, the issue seems not be...

Thanks for the update. Let me know if I can help with some testing again.