hms-dbmi
cde.error.models in batch
Do you think in scde.error.models you should also take batch effect into consideration?
Yes, if you have batch information, you can provide that into the groups parameter so that error-modeling is done in a batch-specific manner.
Jean Fan, PhD Bioinformatics and Integrative Genomics NCI F99/K00 Post-Doctoral Fellow Zhuang Lab | Harvard University 12 Oxford St, Naito 031, Cambridge, MA 02138 web: jef.workshttp://jefworks.com/
On Mar 3, 2018, at 8:52 AM, Poorya Parvizi <[email protected]mailto:[email protected]> wrote:
Do you think in scde.error.models you should also take batch effect into consideration?
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But the problem is, my single cells have two conditions which both exist in different batches. Do you mean in this case I should have 4 groups?