set membership columns with only 0s are not treated as sets

[ngehlenborg]

Identifier,FS30,FS60,FS120,FS180,FS360,BSLPM
5_8S_rRNA,0,0,0,0,0,1
7SK,0,1,1,1,1,0
AABR07004894.1,0,0,0,1,0,0
AABR07015081.2,0,0,1,0,0,0

In the above example, the first column ("FS30") contains only 0s. Trying to create an upset plot on this matrix will only contain sets "FS60", "FS120", "FS180", "FS360", and "BSLPM", even when nsets=6 and empty.intersections=TRUE, e.g.

> upset(Upregulated_Upset,nsets=6,empty.intersections =T)

will generate this:

[madeleineotway]

Hi there, I'm having this same issue and I would like to be able to include the set with nothing present. I have also tried: upset(df, empty.intersections = "on")

Is there any way I can show the empty set?

[jdhenaos]

Hi.

Did you solve this problem? I need to plot an "empty set" too.

Kind regards,

Juan

[b-tierney]

Seconded – any progress on this? Would be a really helpful feature.

Thanks, Braden

[dewrankocak]

Thirded, Im having trouble with this as well

[murillopagnotta]

Hi. Any progress? I also have an empty set that I would like to be represented in the plot Thanks