hmontenegro

--tmpdir with relative path may fail

2

When using MEGAHIT as assembler and using a relative path with `--tmpdir`, Shovill will fail at the assembly step. Here is the snippet from **shovill.log**: ``` [shovill] Assembling reads with...

Conda install and software versions

9

Installing from conda (as of 2020-03-10) is resulting in some software version incompatibilities. Install commands: ``` . ~/bin/.miniconda3/etc/profile.d/conda.sh conda create -n Nullarbor-2.0.20191013 conda activate Nullarbor-2.0.20191013 conda install -c conda-forge -c...

Any plans of replacing crb-blast with shmlast?

This is really a minor, small, tiny, minute issue. The precompiled version 1.0.1 of sepia shows "sepia 1.0.0" for `sepia -V". I didn't test compiling Sepia myself.

Add option to report all matched schemes

2

It would be nice to have an option to report all matched schemes above the score, instead of reporting just the best one. Case in point: for an isolate genome...

miranda.h missing at PyPI

1

The metaRNA-4.0.5 source package from PyPI is missing `miranda.h`. Link for the package: https://files.pythonhosted.org/packages/6f/c0/4a8f278dd03029b0b28766d1c1151fac52e4bd0768833a169af46ef2a21b/metarna-4.0.5.tar.gz