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                                            hkrzystek

config. java.lang.IllegalArgumentException: Please set the HGFA parameter to your human genome reference in the config file at: /usr/local/ximmer/eval/pipeline/config.groovy Error

Hi @bopohdr , Thanks for your reply. It took me a while to understand, but in your command -e and -v are docker run flags and not Ximmer options. I...

config. java.lang.IllegalArgumentException: Please set the HGFA parameter to your human genome reference in the config file at: /usr/local/ximmer/eval/pipeline/config.groovy Error

I'm following this from the Documentation: Using CRAM Format CRAM format saves a lot of space but requires that a reference sequence be specified. This needs to be configured in...

config. java.lang.IllegalArgumentException: Please set the HGFA parameter to your human genome reference in the config file at: /usr/local/ximmer/eval/pipeline/config.groovy Error

> > Hi @bopohdr , > > Thanks for your reply. It took me a while to understand, but in your command -e and -v are docker run flags and...

plans to host on dockerhub?

Hi, I want to do the same: convert the Docker container to Singularity so I can use Ximmer on our research cluster (docker is not installed as a module, but...