hjack123

no applicable method for 'runChromVAR' applied to an object of class "snap"

15

Error in UseMethod("runChromVAR", obj) : no applicable method for 'runChromVAR' applied to an object of class "snap" what could be the reason?

gmat

4

Hi, When creating gmat, is it possible to just make counts under a promoter region of a gene, instead of everywhere on the gene? Thanks!!!

how to check if snap file is complete

1

just realized one sample only has chr1-9 and not the rest... is there a way after making the snap file, we can check if all chromsomes/bam file is captured? hdf5...

Pls help with the error... I am using hg38

1

objs

02

8

Making Seurat LSI Object... Binarizing matrix... Getting top 20000 features... Computing Term Frequency IDF... Computing SVD using irlba... Making Seurat Object... Error in CreateSeuratObject(mat, project = "scATAC", min.cells = 0,...