David E. Condon

@smirarab Homologs is listed as one of the aligners in the GUI

Hi @epruesse @npavlovikj there is now a file defiant-1.1.4.zip on the main repository. Please let me know if this works

Hi @epruesse @npavlovikj there is now a file defiant-1.1.4.zip on the main repository. Please let me know if this works

@npavlovikj @epruesse I've now included roi.c in the main release zip file. Is there anything else that I should do?

Hi @lilypeck could you tell me where I could download that GTF to debug?

[Uploading Qlobata.v3.0.PCG.gtf.refFlat.txt…]() Hi @lilypeck please let me know if the follow gtf.reflat fixes your problem. I've also attached a perl script that can convert GTF to refFlat

hi @lilypeck sorry I've had some family medical issues. use the following Perl script thus: `perl gtf2refFlat.pl Qlobata.v3.0.PCG.gtf` which will output `Qlobata.v3.0.PCG.gtf.refFlat` ``` #!/usr/bin/env perl use strict; use warnings FATAL...

hi @harish0201 I'll get to the problem tonight, I've got a lot on my plate. Thanks for helping to make Defiant better

could you please provide a copy of your input file, 499/6 is impossible, every number should be in [0,1], this fraction is outside of that range

Hi @bug1303 2. Yes, that is a typo, thanks, I've fixed it and it will be corrected in the next version. 3. This makes no difference from Defiant's perspective 4....