hguturu

vim was just an example, not the motivation. The more general motivation is bgzip is slightly different than gzip and there doesn't appear to a reason to conflate the two....

Are there any updates to if S3 credentials via IAM roles will be considered? The workaround has trouble since the credentials are rotated so any jobs that run for more...

The curl command above `curl -s --connect-timeout 0.1 $B/$R` returns an object with a field such as `"Expiration" : "2020-04-14T01:20:09Z"`. This expiration is a fixed time from when the credentials...

Ya its unfortunate the first type of use case doesn't have an easy fix with this workaround. I think the use case also applied with larger streams where they can...

It would be great if it gets added to the to-do list! Thanks!

Should be closed since #113 was merged.

Here you go. [log_2022-04-14_19-58-57.zip](https://github.com/Nesvilab/FragPipe/files/8497182/log_2022-04-14_19-58-57.zip)

Hi, Yes I was running `LFQ-phospho` workflow. Is there a recommended number of max cores for stable performance? I was using 127 and noticed close to 100% CPU utilization on...

Looks like it might even be non-deterministic in the number of threads (i.e. I think I was able to re-run it using the same thread count and it succeeded). Oddly...

```py # pip install "pandas>2" import pandas as pd import sklearn.datasets import itertools X,y = sklearn.datasets.make_classification() df = pd.DataFrame(X, columns=pd.MultiIndex.from_tuples(list(itertools.product(['a'], range(10)))+list(itertools.product(['b'], range(10))))) import anndata a = anndata.AnnData(X=df, obs=y) # /Users/hguturu/miniforge3/lib/python3.10/site-packages/anndata/_core/anndata.py:148:...