Carl Helmick

icon indicating a website link hfxcarl.github.io

icon company Dalhousie University, NS, Canada icon location Halifax, NS, Canada icon location Neuroimaging Data Engineer

Results 2 issues of Carl Helmick

Error in selecting --output-spaces MNIPediatric:cohort-5:res-2

3 comment

### What happened? Running latest 23.2.0 fmriprep on QTAB OpenNeuro dataset and specifying --output-spaces MNIPediatric:cohort-5:res-2. ### What command did you use? ```shell singularity run --cleanenv \ -B /OpenData/QTAB/QTAB/BIDS_raw:/data:ro \ -B...

bug

pybids crashing

3 comment

Pybids crashes immediately when called in qsiprep-0.16.x. Even from a shell into qsiprep-0.16.1 using Singularity on a Linux workstation and calling pybids causes an immediate crash. `$ singularity shell /opt/SingularityImgs/qsiprep-0.16.1.sif...

bug