hfuchs5

"LOSS" not accepted as an alteration type for pivot_cna_wider

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 repex crc_pub % pivot_cna_wider()

Per Karissa: comparing the fusion files there are some genes with new names. We need more unit tests to make sure that this is correctly done

Improve documentation and color defaults for ggcomut

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What is ggcomut measuring? Frequency? I.e. what do the numbers/colors mean? There are some white squares in the heatmap below – what do those mean compared to the tan? It’s...

putting recoded cna character amp/del values into pivot_cna_wider() returns numeric values

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cna % mutate(alteration = recode_cna(alteration)) View(cna) View(pivot_cna_wider(cna))

**What changes are proposed in this pull request?** A new exported helper function which allows users to identify and rename specific point mutations. **If there is an GitHub issue associated...