Leandro Hermida

https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/221/805/GCA_002221805.1_ViralProj14310/GCA_002221805.1_ViralProj14310_genomic.gff.gz The following gene features fail to get converted to two mRNAs with child exons. I know this looks like a weird edge case, but it's an NCBI genome GFF,...

https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/052/245/GCA_003052245.1_ASM305224v1/GCA_003052245.1_ASM305224v1_genomic.gff.gz When I run this the `gffread` it turns this: ``` X14112.1 EMBL intron 4953 6907 . - . ID=id-X14112.1:4953..6907;Note=stable LAT (latency associated transcript);gbkey=intron ``` into this: ``` X14112.1 EMBL...

No data tooltip or function parameter autocomplete help appear for non-base R package functions. Sorry maybe I'm missing a setting but both work for base R functions so I'm guessing...

I cannot tell what is causing it, but either atom-ide-r or r-languageserver, or both, are causing silent R core dumps when using Atom with these plugins on Linux. It didn't...

"VMware Workstation unrecoverable error: (mks) ISBRendererComm: Lost connection to mksSandbox (2878)" at end of disk shrink on Windows 10 host Fedora guest

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I believe since VMware Workstation 16.2 or a recent Windows 10 update (host) that disk shrinking, in my case on a Fedora 34 or 35 guest, causes an mksSandbox core...

btrfs disk shrink support

3

### Is your feature request related to a problem? Please describe. If I'm understanding correctly `vmware-toolbox-cmd` doesn't currently support easy linux guest VM disk shrinking of `btrfs` disk partitions like...

GNOME desktop freezing on VMware Workstation Pro for Windows host and Fedora guest (likely due to 3D acceleration)

85

Hello VMware Development Team, I have a new Windows laptop running latest Windows 10.0.15063 and VMware Workstation 12.5.7 build-5813279. It uses hybrid graphics between integrated Intel and Nvidia GPUs using...

nvme I/O timeout, aborting warning messages in journal and short I/O hang on Fedora guest VM Windows host

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### Describe the bug I see quite often warnings messages like `nvme nvme0: I/O 34 QID 13 timeout, aborting` in the journal and it correlates with I/O appearing to hang...

`$SLURM_JOB_ID` not set correctly in `remote-job-local-storage-prefix` when running snakemake in a SLURM job context (which many cluster environments require)

6

**Snakemake version** 8.16 **Describe the bug** There are many cluster environments where you are not allowed to run snakemake from login nodes, and you have run snakemake in a SLURM...

Snakemake only submits one job at a time to SLURM and waits for job to complete before submitting another one when `jobs: unlimited`, `cores: all`, `max-jobs-per-second: 1`

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**Snakemake version** 8.17 **Describe the bug** In Snakemake 8.17 using Slurm plugin if my profile has `job: unlimited`, `cores: all`, and `max-jobs-per-second: 1` Snakemake only submits one job at a...