Herald

Unable to filter down to specific species using facet_Organism in keyword search

3

The `facet_Category` query string works fine for the `GET /search` endpoint, but `facet_Organism` behaves oddly. ``` GET www.flymine.org/query/service/search?q=eve&facet_Category=Protein&facet_Organism=D.virilis 200 {"totalHits":3,"facets":{"Category":{"Protein":3},"organism.shortName":{"D. virilis":1,"D. erecta":1,"D. pseudoobscura":1},"pathways.name":{}},"results":[ {"id":23007081,"type":"Protein","fields":{"primaryAccession":"Q8I1G6","organism.name":"Drosophila erecta","primaryIdentifier":"Q8I1G6_DROER"},"relevance":1}, {"id":7077874,"type":"Protein","fields":{"primaryAccession":"B4LN44","organism.name":"Drosophila virilis","primaryIdentifier":"B4LN44_DROVI"},"relevance":1}, {"id":6004053,"type":"Protein","fields":{"primaryAccession":"Q28Z10","organism.name":"Drosophila pseudoobscura","primaryIdentifier":"Q28Z10_DROPS"},"relevance":1} ],"executionTime":"2019.08.14...

Gradle needs to start or deploy a second time to serve webapp

4

The first time `./gradlew cargoDeployRemote` or `./gradlew tomcatStartWar` is run on a fresh build, it will complete successfully but opening the webapp will return the tomcat error page `HTTP Status...

It should give the same output as the *[FASTA...]* buttons in the JSP webapp region search results page. Currently we only have web services to get the FASTA sequence for...

The Flymine JSP webapp is now hosted on https://legacy.flymine.org/flymine/begin.do If you run a region search, the results with links to report pages will use https://www.flymine.org/flymine/report.do?id=4568053 which in effect sends you...

Here's the response to a FacetSearch request, ``` GET www.humanmine.org/humanmine/service/facets?q=gata&facet_organism.shortName=H.%20sapiens 200 {"facets":{"results":[{"Category":[{"name":"Exon","value":497},{"name":"Gene","value":83},{"name":"MRNA","value":49},{"name":"Allele","value":24},{"name":"Protein","value":11},{"name":"Transcript","value":11}]},{"Organism":[{"name":"H. sapiens","value":675}]}]},"executionTime":"2019.08.15 11:03::48","wasSuccessful":true,"error":null,"statusCode":200} ``` it returns `"Organism"` as the key for the organism facet. This differs from a QuickSearch...

Count webservice hits to template rankings

1

Templates each have a ranking that is based on how many unique clicks it has gotten in the JSP webapp. When the templates are used from Bluegenes, these aren't counted...

Ever since https://github.com/intermine/intermine/commit/c9c07f4fcf70ffa18fff871268917380ac4eee3d we have been using the non-minified bundle of imtables, which is 1.4MB larger. We should change this to use `imtables.min.js` to save bandwidth, and probably include a...

Timestamp not reproducible when using seed

1

It seems like `timestamp()` and possibly more of the time/date functions use a date relative to the current date. This causes the values generated from these functions to not be...

Feature request: Different icon for space with/without windows

2

Thanks for making this! It works great and is a godsend for someone used to having this on Linux (a shame that Mission Control doesn't have a checkbox to automatically...

Stops working after it attempts to modify an "unmodifiable" file

9

After running nvim with parinfer-rust for many hours, parinfer will suddenly stop completing parens, fixing parens when changing indentation, and everything else the plugin usually does. This will apply to...