heathergeiger

@Hoohm asking one of the sys admins to help install now! Update: Installed, submitted with 8 cores. Should I also be specifying a chunk size, or will it do that...

Deleted previous comment about new version not working by the way. I had an error in my path so was still running with the old version. Retrying with the actual...

OK actual new version has still been running for over 24 hours now, on a 371M read sample. This is more than would be expected proportionally based on the runtime...

Just checking in on this again. Like I said, new version doesn't seem to have helped.

FYI, I was able to resolve this by manually editing the appropriate lines to add "exp" around the calculation of bestPPs[i] in scripts cmd_plp_find_mux_clust.cpp, cmd_cram_freemuxlet.cpp, and cmd_cram_freemux2.cpp. Alternatively, it seems...

Edit: Looks like I can get the barcodes to match up perfectly by taking the complement of the 8th and 9th base (switch A to T, T to A, C...