HC

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How about to get the bam file through peak.bed file using the following command: bedtools bedtobam -i "$i".bed -g genome_table.txt >"$i".bam

May I ask how many kinds of data you used to assemble the wheat genome, the same as the 20G genome? Is the sequencing depth the same?

Hello, I am also try to use hifiasm to assmeble a genome about 20G, I have inputed ONT, HiFi and Hi-C data all together. I got the bin file on...

> Hi @hcph, could you please show me the command line? Is hifiasm still running with all CPUs? Thank you for your reply. My command is [hifiasm -o total_add.asm -t...

> @pashapu43 Could you please show the log file? Sorry for the late reply since I was quite busy this month. Thank you for your reply. The log file is...