GTDB_Kraken

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Downloading GTDB database from NCBI using efetch OR using --sequence-dir option : doesn't work

2

Dear @lskatz and @hcdenbakker I am trying to download the GTDB database and building it using Kraken2. When I use the following code as mentioned on Github- `perl scripts/gtdbToTaxonomy.pl --infile...

Jigyasa3

Hi guys, I'm trying to download the kraken2 gtdb database using google_download.sh. The output I get is ``` % Total % Received % Xferd Average Speed Time Time Time Current...

flashton2003

Update to Release 04-RS89 (19th June 2019)

1

Welcome to GTDB Genome Taxonomy DataBase 145,904 genomes Release 04-RS89 (19th June 2019) https://gtdb.ecogenomic.org/downloads

tseemann

Dear GTDB_Kraken, First off, thank you for sharing this! I was wondering whether the taxonomy folder you included is compatible with the standard reference libraries provided by kraken2-build? In other...

slambrechts