Update to Release 04-RS89 (19th June 2019)

[tseemann]

Welcome to GTDB Genome Taxonomy DataBase 145,904 genomes Release 04-RS89 (19th June 2019)

https://gtdb.ecogenomic.org/downloads

[tseemann]

From Fredrik Boulund:

#!/bin/bash
# Download pre-made Kraken2 database based on GTDB r89
# https://github.com/rrwick/Metagenomics-Index-Correction
# https://monash.figshare.com/articles/GTDB_r89_54k/8956970
# https://www.biorxiv.org/content/10.1101/712166v1
set -eou pipefail

outdir="gtdb_r89_54k"
base_filename="gtdb_r89_54k_kraken2_"

mkdir -pv $outdir
cd $outdir
wget https://monash.figshare.com/ndownloader/files/16378271  --output-document "${base_filename}08GB.tar"  #08GB index
wget https://monash.figshare.com/ndownloader/files/16378274  --output-document "${base_filename}16GB.tar"  #16GB index
wget https://monash.figshare.com/ndownloader/files/16378277  --output-document "${base_filename}32GB.tar"  #32GB index
wget https://monash.figshare.com/ndownloader/files/16378295  --output-document "${base_filename}64GB.tar"  #64GB index
wget https://monash.figshare.com/ndownloader/files/16378322  --output-document "${base_filename}150GB.tar"  #full index (150GB)