Training-modules
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hbctraining
Materials for short, half-day workshops
- positional param loop section: add explicit statement to `cd raw_fastq` before writing loop script - long exercise in positional params: for some reason all questions are labeled as "1."...
Currently this lesson uses a park ranger log as a input data, would be good to convert it to a metadata file instead, in the future. https://github.com/hbctraining/Training-modules/blob/master/Intermediate_shell/lessons/AWK_module.md
Care with sed on the Advanced Unix module. Macs come with BSD sed, but the lesson is for GNU sed. There is some functionality in the lesson that doesn't work...
I went through the python module and had a number of edits, notes, and questions. These can all be found in my version of the colab file: https://colab.research.google.com/drive/1Zo-Q1uHUcPsjPCT-gUKo2A5m__eYm4VP?usp=sharing
- [ ] 1. Salmon/sleuth (Prereq: familiarity with HPC, bash and R) - [x] 2. SRA/GEO data download (Prereq: familiarity with HPC and bash) - [ ] 3. Sequence data...
There should be continuity so we need to decide AnnotationHub or AnnotationDbi
