Harald Barsnes

A bit hard to tell from the screenshot as the resolution is a bit poor. Can you tell me which search engine is causing this error? Or perhaps provide a...

Can you please share the PeptideShaker log file once again?

I'm afraid you cannot attach files when replying to the issues via email. Rather you have to upload them directly in the issue tracker.

Hi Mat, I'm afraid this option is currently only available from the graphical user interface. We are however in the process of reformatting and extending the command line support for...

I've just released SearchGUI version 4.3.8 that should take care of the problem with the buffer size. If this is not the case, please let me know and I'll reopen...

> This still happens in the latest version .. (2.0.25) I know. It has not been looked into yet. Hence the reason why the issue is still open. ;)

Hi Antonio, This is not supported at the moment, but we'll keep it in mind for future releases. Not sure if making the results interpretation easier is a good enough...

Hi Antonio, > but on the other hand, it does make sense to make protein ids unique to a single group.. it's a logical processing step to perform isn't it?...

Hi Antonio, > What I meant by logical is that in the end one needs to be able to provide a single quantification value for each protein group. I think...

Hi Antonio, > drops protein groups containing proteins which are simultaneously contained in smaller protein groups. Far from perfect, but a simple way of getting each protein id to occur...