Stelios Gkionis

> You can download the yaml file [here](https://github.com/snakemake/snakemake-wrappers/raw/0.77.0/bio/cutadapt/se) and modify the setting of snakemake file like this: ``` wrapper: "file://path2yaml" ``` This requires that I run the pipeline from a...

> Hi all, > > I was having exactly the same issue when finalizing the pipeline. The hic file was ok, but error "tail: +: invalid number of bytes" and...

I am probably getting the same behavior. I am running KrakenUniq v1.0.3 on a Unix HPC. The report file contains only the two lines mentioned above. Also, the runs never...

Hi, sorry I edited the version later. I'm running v1.0.3 in a bash script, using the Standard database so 377GB, no preloading. krakenuniq --db /path/to/database --threads 40 --paired $R1 $R2...

Update: Preloading the database solved the issue for most files in my dataset, but it still occurs for some.

Thank you for your help. Unfortunately it didn't fix the problem. I'm rerunning with an even smaller --preload-size, to see if it makes a difference.

I run it at 20% available memory (100GB/490GB) and it still fails for a couple of my samples. The memory is not even being reported as fully used. They are...

It seems to hang and the last line of the log reads "Processed 65582031 sequences (database chunk 1 of 4)" every time.

I have 490GB available. When using --preload-size 100G it seems to work, but the run times out after 48h, which I think is not normal. For the smaller datasets with...

Hi! After reading this I am still not sure how to reuse the bin files. Are all the generated bin files needed? My `-o` includes the path, and tried both...