Hayato Ikoma

icon indicating a website link https://stanford.edu/~hikoma/

icon company @computational-imaging icon location Pleasanton, CA icon location I am a computational biologist at 10x Genomics working on computational imaging and image analysis.

Results 4 issues of Hayato Ikoma

Fix build on Travis CI and add Python 3.7 for the build

1 comment

Fixed build on Travis CI. I'm not sure if Python 3.5 should be dropped, but I added Python 3.7 for the build.

set random seed for np.random.default_rng

10 comment

## Description This commit fixes the issue of random seed, which I reported in #6862. As the random seed is not set at many of unit tests, the CI sometimes...

:wrench: type: Maintenance
:sleeping: Dormant

Fix a bug of parsing channel validity

3 comment

This PR fixes the bug of parsing channel validity and also adds a support of another (probably, newer) metadata format. The sample nd2 data downloaded from OME in the unit...

JPEG2000 decoding failure

2 comment

After upgrading to `v2024.6.1`, I'm sometimes encountering a decoding failure of JPEG2000 with `imagecodecs._jpeg2k.Jpeg2kError: opj_decode or opj_end_decompress failed`. As it fails only in a long script and I'm using `imagecodecs`...

bug