David Haussler

This sounds really sensible. On Thu, Apr 2, 2015 at 6:01 PM, Benedict Paten [email protected] wrote: > On Thu, Apr 2, 2015 at 12:21 PM, Heng Li [email protected] wrote: >...

I would agree with @richarddurbin https://github.com/richarddurbin that because of its simplicity, the "simple subgraph" of a side graph that is merely a subset of the sequences and a subset of...

As I understand it, the controversy of subgraph = set of sequences and joins vs subgraph = set of segments of sequences and joins revolves around where and how the...

This issue is also coming up an another thread Updating methods to work with side graphs. (#269) Can we make a connection here? Over there is discussion of string graph...

This is very clean and on target. On Sun, Jun 7, 2015 at 6:03 AM, David Glazer [email protected] wrote: > Here's a first cut at requirements, based largely on what...

This is an extremely important one. We can't let its scope totally scare us off. Richard if you had somebody to help you on your end we could walk through...

Kevin, so great that you are working with Marc Fiume and Beacon as the API is nailed down! On Fri, May 27, 2016 at 5:11 PM, Kevin Osborn [email protected] wrote:...

Ccing Peter Goodhand, as his team has done a lot of work on this. -D On Fri, Jul 10, 2015 at 3:18 PM, Mark Diekhans [email protected] wrote: > What's the...

Yes. And in addition to representing 0-length intervals, closed-open intervals still concatenate well. For example, [1,3) and [3,8) concatenate nicely to form [1,8). On Wed, Apr 8, 2015 at 12:40...

It is best to have the capability of representing 0 length intervals, even if in some circumstances it is considered an error to use them. -D On Wed, Apr 8,...