squigulator
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hasindu2008
a tool for simulating nanopore raw signal data
Hi, I'm wondering can I get the event value from this tool? It seems it outputs the raw signal directly. Thank you very much!
Thanks so much for making such a useful tool @hasindu2008 et al. - it's been a delight to work with! I unfortunately needed to do a Blow5 to Pod5 (...)...
Can this tool account for differences between the 4kHz and 5kHz sampling frequency (switchover after ONT sequencing software version `23.04`)?
Thank you for developing this amazing tool. I am wondering if there is a way to simulate reads with DNA methylation signals. If not, do you have any plan to...
Provide an argument to pass a genomic region. For example simulate full contig or reads for the region `chr22:20,293,718-20,294,757` of the human genome. Please note that the region should be...
Hello, Thank you for providing this remarkable tool. I'd like to inquire if an alternative version of the tool is available that doesn't necessitate compilation. I'm currently working within the...
When I try to simulate the ideal read for a 290 nt fasta inputfile the output signal file contains signals with variable length, i.e., 2380, 2230, 2070, 2710, 2580, 2260,...
Hi, is it possible for RNA reads simulation to include parameters defining distribution of poly(A) lengths? (For simplicity it can be just mean+sd). Thanks!
**EDIT I guess it would help if I were to read the publication to see especially the figures on time and amplitude domains' effects on base identity.** Hi, thank you...
Hello team, nice work on this project, I appreciate all of the development over the last several years on it. I and my group are primarily generic HW DNN accelerator...
