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Genomic region simulation

Open hiruna72 opened this issue 1 year ago • 0 comments

Provide an argument to pass a genomic region. For example simulate full contig or reads for the region chr22:20,293,718-20,294,757 of the human genome. Please note that the region should be able to given as it appears on IGV (with commas).

squigulator hg38noAlt.fa -x dna-r9-prom -o reads.blow5 -n 150000 --region chr22:20,293,718-20,294,757

hiruna72 avatar Feb 08 '24 12:02 hiruna72