Harsh Agrawal

Hey Jonathaking, Thanks for your swift reply. I really appreciate all the effort you've put into sidechainnet. It's been incredibly useful. As you mentioned I was trying to use the...

Hey, thanks for your reply. Here's a copy of the colab notebook: https://colab.research.google.com/drive/1X-Z7qcDUyQxIXnBYyWd042BcQr3UsF-z?usp=sharing. Kindly let me know if you can find the issue or suggest me how it can be...

Gotcha. Thanks. I'll try to fetch the correct Ids and post if I encounter any other issues.

Could you please post an update here in the chat as well? Am doing something similar and would love to know how this turns out.

I found in one of the threads that they use the Alphafold Multimer LSI score rather than PAE score for filtering. Have you tried that? https://github.com/RosettaCommons/RFdiffusion/issues/211#issuecomment-2125399851

It finishes in a few minutes when I use the .yaml file. Can you highlight which exact step took the longest?