Hao Wang

Consistent output multiple-value elements as array of string in JSON/Yaml format.

4

#### Problem description Here I have a suggestion regarding the JSON/Yaml [scheme](http://cobrapy.readthedocs.io/en/latest/_modules/cobra/io/json.html). Specifically, I suggest to output the fields that have multiple elements (e.g. metChEBIID, rxnECNumbers) as array of string...

refactor: remove prefix 'M_' and 'R_' in exprotModel/importModel functions

19

### Description of the issue: * Prefixes `M_` and `R_` are added by `exprotModel` function while exporting, and removed by `importModel` while importing. This was initially designed to [follow](https://github.com/SysBioChalmers/RAVEN/blob/17df2147f604951705bdb2fbfcf12dac913a491e/io/importModel.m#L71) the...

feat: create a centralized and comprehensive collection of curated enzyme complexes for modeling human metabolism

1

### Description of the issue: * A milestone of **humanGEM** model curation has been achieved with the release of [Human1](https://github.com/SysBioChalmers/human-GEM/releases/tag/v1.0.0-beta). However, some topics still worth to be revisited, such as...

Incorrect values in the rxnConfidenceScores field

2

### Description of the issue: * The values in the `rxnConfidenceScores` field are mostly incorrect and need to be fixed #### Expected feature/value/output: * Develop a plan for assigning proper...

### Description of the issue: * [MEIKIN](https://www.uniprot.org/uniprotkb/A0A087WXM9/entry) ([ENSG00000239642](https://www.ensembl.org/Homo_sapiens/Gene/Summary?g=ENSG00000239642)) is a [key regulator of kinetochore function](https://pubmed.ncbi.nlm.nih.gov/25533956/) during meiosis I. Specifically, it regulate kinases in [cohesin protection](https://pubmed.ncbi.nlm.nih.gov/33888556/). However, it was mis-annotated as...

### Main improvements in this PR: - add missing word - remove unnecessary newlines - fix typo - add missing quotation mark - correct compound interest formula

mission and vision: march towards completely open and transparent curations

5

### This issue attempts to define the mission of **Human-GEM**: * The `Human-GEM` is deposited as a publicly accessible repository on GitHub and openly curated by researchers worldwide * [Metabolic...

feat: association of human paralog genes with tissue source

1

### Description of the issue: * Paralogs are genes evolved from duplication events, and retain overlapping or redundant function. Members of a paralog group are often specifically expressed across different...

thanks for providing these books

**Please describe the feature** As a user, I want an option to see previous model releases so that development history of integrated models can be traced. **Acceptance Criteria** - [...