hanshanmengqi

Can I use hic-pro for Hi-C 3.0 ?

1

Hi, Thanks for developing such a helpful tool! But I saw a paper (https://www.frontiersin.org/articles/10.3389/fpls.2023.1223591/full) that said hic-pro is unsuitable for Hi-C 3.0. Because Hi-C 3.0 involves fragmenting with two enzymes...

Hello, I'm new to the BWA software, and I don't understand the parameter '-5SP' in bwa mem. Could anyone explain it to me? Thanks! Han

Can I use this tool for plants?

3

Hi, Thank you for your interesting tool. I work on plants, so can I use it for plants? Best, Han

Hello Miao, Thank you for your multifunctional package! It's very nice. However, I encountered a situation where, if I'm not mistaken, the sample names used in the circos_heatmap function are...

**Are you sure this is an issue?** Hello, Thank you for providing such interesting software! I have a question about generating a .hic contact matrix with fragment resolution using Micro-C...

Hello, Thank you for providing such helpful software! I have a question about generating a .hic contact matrix with fragment resolution using **Micro-C data**. As shown in the attached figure,...

Hello @tushiqi, Thank you for developing this very helpful tool. I would like to know if I can use this tool on spike-in ChIP-seq data. Do you have any suggestions...