Hanin Ibrahim Ahmed

icon company KAUST icon location Plant genomics and population genomics

Results 4 comments of Hanin Ibrahim Ahmed

failed to create a plot

I am getting the same error. it's so disappointing to see the issue is open since November and has not been solved.

Hifiasm 0.13 does not produce an assembly.

I am sure the reads I have are HiFi reads. Assembly with 3 SMRT cell (A,B, and C) worked perfectly fine. logfile: https://drive.google.com/file/d/1HhqT25YLTUmtCHMIKVqfRDBJ1u_HTN6O/view?usp=sharing The kmer histogram doesn't look weird http://genomescope.org/analysis.php?code=58sWt4JozZkmuWwOWLIy

Hifiasm 0.13 does not produce an assembly.

These are the reads stats: SMRT cell name | SMRT_A | SMRT_B | SMRT_C | SMRT_D Mean read length | 14,728.9 | 14,773.4 | 14,748 | 14,604 Mean read quality...

Hifiasm 0.13 does not produce an assembly.

Hello @tallnuttrbgv At the end the issue I was having was because the reads obtained from the fourth SMRTcell were contaminated Basically the company mixed up two different samples (wild...