Dan Handwerker

@n-reddy and I ran this on distinct datasets. We're both seeing the same thing. As expected, this PR is either identical to main or is accepting some components that are...

I updated the code and documentation to include both our current and the original meica trees. I'm calling them `meica` and `tedana_v0.013` That name might not stick, but I wanted...

Checking if @marco7877 @BahmanTahayori and @goodalse2019 or others have had a chance to run and compare the three branches before our scheduled Oct 17 dev call. Besides coming up with...

I made all the changes we discussed a few months ago and this should now be ready to review & hopefully merge. I updated the opening comment to detail everything...

@n-reddy and @dowdlelt Could you look this over and run it with the `tedana` and `meica` trees to make sure everything looks good? If there are any issues, I'd like...

@n-reddy Can you re-approve after the last few updates?

I think this is a conflict between empirical T2* mapping and using variation in T2* weighting for calculating stuff, like we do in tedana. As noted, the longer echoes will...

Thank you for getting this set up! At first glance, this looks good except for two things I want to discuss/suggest: 1. What numbers do we want to be stored...

I don't think this is that much more complex to what you have. Right now someone can provide a tsv file with 16 regressors. The added layer is to provide...

I spoke to Gang Chen from the AFNI team about this degrees of freedom discussion. His perspective, which I agree with, is, for this application, estimating autocorrelation and getting an...