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Variant Caller Analysis Dashboard and Data Management System

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Tracking issues I ran into while setting up Cycledash on a new laptop: - [ ] Running `gulp prod` the first time fails due to a missing bootstrap file. Subsequent...

If `varcode` finds the top priority effect for a variant to be of type `Exonic Splice Site`, it makes sense to show also the alternate effect. We currently do not...

annotations

Pysam build fails against Python v3.4.3: ![screen shot 2015-06-17 at 4 27 51 pm](https://cloud.githubusercontent.com/assets/7809/8218186/609238d8-150f-11e5-8238-3ba40a65d247.png)

enhancement

Sorry this error isn't more informative. In our hammerlab cycledash instance, when I try to Add a Run with these files, I get an "internal server error": /user/ahujaa01/brody-lymphoma/brody_442/brody_442-bcell-tumor-bwa-mem-gap11-gep4-dedup-indelrealigned-bqsr.bam /user/ahujaa01/brody-lymphoma/brody_442/brody_442-tcell-normal-bwa-mem-gap11-gep4-dedup-indelrealigned-bqsr.bam /user/ahujaa01/brody-lymphoma/brody_442/brody_442-bcell-bwa-mem-gap11-gep4-dedup-indelrealigned-bqsr-Mutect-default-merged.vcf...

![image](https://cloud.githubusercontent.com/assets/455755/8172826/0a83f77e-1393-11e5-81e1-2056561cee6f.png)

bug
page: /examine

![68747470733a2f2f64317a6a637571666c6264356b2e636c6f756466726f6e742e6e65742f66696c65732f6163635f3230343336352f31314157613f726573706f6e73652d636f6e74656e742d646973706f736974696f6e3d696e6c696e653b25323066696c656e616d653d53637265656e25323053686f7425323032](https://cloud.githubusercontent.com/assets/167803/8173156/bbcc5202-13c9-11e5-9865-40f5da717e16.png)

`Download the React DevTools for a better development experience: http://fb.me/react-devtools pileup.js:26026`

bug
pileup

e.g. ![](https://d1zjcuqflbd5k.cloudfront.net/files/acc_204365/3mDj?response-content-disposition=inline;%20filename=Screen%20Shot%202015-06-16%20at%2001.06.18.png&Expires=1434409667&Signature=TqZet5XKR-YYynFe~EoMpZgU17OZicnpahi-9lSZKvnlz4vbx7mr8AYMcAtnuhhh4pDPa20WWjnPHsvxfswA9dSUf667OeW78hXHAl-yWT~Hi7e8WT3VOMZiTyZpaV5nnoyYJiZTx7gDnqV55TqQ1gWEbHiVCn5-Wb3Ri7xZ5Ss_&Key-Pair-Id=APKAJTEIOJM3LSMN33SA) (Can't scroll to them)

bug
UI